Package: CancerEvolutionVisualization 3.0.0

Paul Boutros

CancerEvolutionVisualization: Publication Quality Phylogenetic Tree Plots

Generates tree plots with precise branch lengths, gene annotations, and cellular prevalence. The package handles complex tree structures (angles, lengths, etc.) and can be further refined as needed by the user.

Authors:Paul Boutros [cre], Adriana Salcedo [aut], Dan Knight [aut], Helena Winata [aut], Selina Wu [ctb]

CancerEvolutionVisualization_3.0.0.tar.gz
CancerEvolutionVisualization_3.0.0.zip(r-4.5)CancerEvolutionVisualization_3.0.0.zip(r-4.4)CancerEvolutionVisualization_3.0.0.zip(r-4.3)
CancerEvolutionVisualization_3.0.0.tgz(r-4.4-any)CancerEvolutionVisualization_3.0.0.tgz(r-4.3-any)
CancerEvolutionVisualization_3.0.0.tar.gz(r-4.5-noble)CancerEvolutionVisualization_3.0.0.tar.gz(r-4.4-noble)
CancerEvolutionVisualization_3.0.0.tgz(r-4.4-emscripten)CancerEvolutionVisualization_3.0.0.tgz(r-4.3-emscripten)
CancerEvolutionVisualization.pdf |CancerEvolutionVisualization.html✨
CancerEvolutionVisualization/json (API)
NEWS

# Install 'CancerEvolutionVisualization' in R:
install.packages('CancerEvolutionVisualization', repos = c('https://uclahs-cds.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/uclahs-cds/package-cancerevolutionvisualization/issues

Datasets:
  • GRCh37 - GRCh37 Chromosom Information
  • GRCh38 - GRCh38 Chromosom Information
  • colours - Colour scheme vector

On CRAN:

5.81 score 2 stars 4 scripts 230 downloads 6 exports 22 dependencies

Last updated 2 days agofrom:112d1e601e. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 20 2024
R-4.5-winNOTENov 20 2024
R-4.5-linuxNOTENov 20 2024
R-4.4-winNOTENov 20 2024
R-4.4-macNOTENov 20 2024
R-4.3-winNOTENov 20 2024
R-4.3-macNOTENov 20 2024

Exports:create.ccf.heatmapcreate.ccf.summary.heatmapcreate.clone.genome.distribution.plotcreate.cluster.heatmapcreate.phylogenetic.treeSRCGrob

Dependencies:BoutrosLab.plotting.generalclasscliclusterdeldire1071gluegridExtragtablehexbininterpjpeglatticelatticeExtralifecycleMASSpngproxyRColorBrewerRcppRcppEigenrlang

User Guide

Dan Knight

Rendered fromUserGuide.Rmdusingknitr::rmarkdownon Nov 20 2024.

Last update: 2024-08-06
Started: 2022-08-02

Readme and manuals

Help Manual

Help pageTopics
Colour scheme vectorcolours
CCF Distribution Heatmapcreate.ccf.heatmap
CCF Summary Heatmapcreate.ccf.summary.heatmap
Create Clone Genome Distribution Plotcreate.clone.genome.distribution.plot
Cluster Heatmapcreate.cluster.heatmap
Phylogenetic Tree Plotcreate.phylogenetic.tree
GRCh37 Chromosom InformationGRCh37
GRCh38 Chromosom InformationGRCh38
Subclone Tree PlotSRCGrob