Package: CancerEvolutionVisualization 3.0.0

Paul Boutros

CancerEvolutionVisualization: Publication Quality Phylogenetic Tree Plots

Generates tree plots with precise branch lengths, gene annotations, and cellular prevalence. The package handles complex tree structures (angles, lengths, etc.) and can be further refined as needed by the user.

Authors:Paul Boutros [cre], Adriana Salcedo [aut], Dan Knight [aut], Helena Winata [aut], Selina Wu [ctb]

CancerEvolutionVisualization_3.0.0.tar.gz
CancerEvolutionVisualization_3.0.0.zip(r-4.5)CancerEvolutionVisualization_3.0.0.zip(r-4.4)CancerEvolutionVisualization_3.0.0.zip(r-4.3)
CancerEvolutionVisualization_3.0.0.tgz(r-4.4-any)CancerEvolutionVisualization_3.0.0.tgz(r-4.3-any)
CancerEvolutionVisualization_3.0.0.tar.gz(r-4.5-noble)CancerEvolutionVisualization_3.0.0.tar.gz(r-4.4-noble)
CancerEvolutionVisualization_3.0.0.tgz(r-4.4-emscripten)CancerEvolutionVisualization_3.0.0.tgz(r-4.3-emscripten)
CancerEvolutionVisualization.pdf |CancerEvolutionVisualization.html✨
CancerEvolutionVisualization/json (API)
NEWS

# Install 'CancerEvolutionVisualization' in R:
install.packages('CancerEvolutionVisualization', repos = c('https://uclahs-cds.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/uclahs-cds/package-cancerevolutionvisualization/issues

Datasets:
  • GRCh37 - GRCh37 Chromosom Information
  • GRCh38 - GRCh38 Chromosom Information
  • colours - Colour scheme vector

On CRAN:

5 exports 2 stars 1.87 score 22 dependencies 4 scripts 249 downloads

Last updated 20 days agofrom:b27c69365f. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 11 2024
R-4.5-winOKSep 11 2024
R-4.5-linuxOKSep 11 2024
R-4.4-winOKSep 11 2024
R-4.4-macOKSep 11 2024
R-4.3-winOKSep 11 2024
R-4.3-macOKSep 11 2024

Exports:create.ccf.heatmapcreate.ccf.summary.heatmapcreate.clone.genome.distribution.plotcreate.cluster.heatmapSRCGrob

Dependencies:BoutrosLab.plotting.generalclasscliclusterdeldire1071gluegridExtragtablehexbininterpjpeglatticelatticeExtralifecycleMASSpngproxyRColorBrewerRcppRcppEigenrlang

User Guide

Dan Knight

Rendered fromUserGuide.Rmdusingknitr::rmarkdownon Sep 11 2024.

Last update: 2024-08-06
Started: 2022-08-02

Readme and manuals

Help Manual

Help pageTopics
Colour scheme vectorcolours
Subclone Tree Plotcreate.ccf.heatmap
Subclone Tree Plotcreate.ccf.summary.heatmap
Create Clone Genome Distribution Plotcreate.clone.genome.distribution.plot
Subclone Tree Plotcreate.cluster.heatmap
GRCh37 Chromosom InformationGRCh37
GRCh38 Chromosom InformationGRCh38
Subclone Tree PlotSRCGrob